svgbit.plot.spot_type_map

svgbit.plot.spot_type_map(dataset: svgbit.core.STDataset.STDataset, save_path: Optional[Union[str, pathlib.Path]] = None, he_image: Optional[Union[str, pathlib.Path, PIL.Image.Image]] = None, draw_uncertain: bool = True, s: float = 16, dpi: float = 300) → matplotlib.figure.Figure

Draw SVG type map.

Parameters

datasetSTDataset

A STDataset with hotspot and SVG cluster estimation finished.

save_pathstr or pathlib.Path, default None

Heatmap save path. If None, plot will not save.

he_imagestr, pathlib.Path or PIL.Image.Image, default None

H&E image of tissue. If None is given (default), distribution map will not show tissue picture.

draw_uncertainbool, default True

Whether to draw uncertain spots.

sfloat, default 16

Spot size.

dpifloat, default 300

DPI for saved figure.

Returns

figmatplotlib.figure.Figure

A matplotlib.figure.Figure plot.