svgbit.load_10X

svgbit.load_10X(read_path, make_sparse=True) → svgbit.core.STDataset.STDataset

Load 10X Genomics Space Ranger outputs and generate STDataset.

Parameters

read_pathstr or pathlib.Path

A location points to 10X outs dir. Assume directories filtered_feature_bc_matrix and spatial are in this path.

make_sparsebool, default True

Whether to use sparse DataFrame in order to save memory.

Returns

datasetSTDataset

A STDataset instance generated from read_path.